Visual Studio Advanced Save Options Resetting

To suppress the line ending inconsistency pop-ups I've been using the advanced save options in visual studio and setting them to Windows (CR LF) so that it fixes it on every save. I know that fixing the default .cs file also works but I preferred to do it through VS if possible. However, it seems that when I start up new scripts or switch projects the settings occasionally revert back to the default and I'm not quite sure what the reason is. Has anyone encountered this issue before?