How to execute MenuItem for multiple objects once.

Use the parametered version of the method:

 static public void MethodName(MenuCommand menuCommand)
 {
             //Prevent executing multiple times when right-clicking.
         if (Selection.objects.Length > 1)
         {
             if (menuCommand.context != Selection.objects[0])
             {
                 return;
             }
         }
 }

Unfortunately the option above doesn't work if you want to manage selection inside your custom menu method. Here is my workaround:

 private static float _lastMenuCallTimestamp = 0f;
 [UnityEditor.MenuItem("GameObject/Menu Option", priority = 0)]
 private static void YourMenuOption() {
         if (Time.unscaledTime.Equals(_lastMenuCallTimestamp)) return;
         // place your code here
         _lastMenuCallTimestamp = Time.unscaledTime;
 }

I've also tried using EditorApplication.timeSinceStartup and Time.timeSinceStartup but I couldn't get a persistent timestamp with those. It seems like timeSinceStartup values are synchronized with the system time and keep updating even when Unity freezes (e.g. when you're trying to apply your custom menu method to a large number of objects).

Another option is to simply deselect the menu items after the first call.

  private static void YourMenuOption() {
          if (Selection.objects.Length <= 0) return;
          // place your code here
          Selection.objects = null;
  }

Not an answer but crazily enough, if you call the menu item from the top menu bar (Unity 2018.2.19f1) it only calls it once aannndddd the MenuCommand.context is null... which is probably a bug.